The Appeals Process vs. Tax Court: Navigating Your Tax Dispute in Missouri
- ALTA Tax Relief
- Apr 10
- 5 min read
Updated: Apr 14

Receiving an official notice from the IRS claiming you owe additional tax, interest, or penalties can be an incredibly stressful experience. Many taxpayers in the St. Louis area and across the country mistakenly believe that once the IRS issues a bill, there is no way to fight it. However, the truth is that the IRS is not always correct. If you disagree with an IRS determination regarding your tax liability, penalties, or aggressive collection actions, you have a legal right to challenge their findings.
At ALTA Tax Relief, we specialize in helping individuals and businesses protect their rights. Our team includes former IRS employees who understand the internal workings of the agency, ensuring you have an expert advocate on your side. Two primary paths for challenging the government are the IRS Appeals process and filing a case with the United States Tax Court. Choosing the correct strategy is vital, as it can significantly impact the final resolution of your debt.
If you are currently facing an IRS dispute and aren't sure which path to take, contact ALTA Tax Relief at 314-202-4342 for a free 30-minute consultation with a real human being who has the experience you need.
Understanding the IRS Appeals Process
The IRS Office of Appeals is an independent division within the agency. Its primary mission is to resolve tax disputes without the need for a costly and time-consuming court battle. When you enter the Appeals process, an Appeals Officer—who is tasked with being impartial—reviews the facts of your case and applies the tax law to reach a fair resolution for both the taxpayer and the government.
For many St. Louis taxpayers, this is the most effective way to handle a dispute. You might find yourself in the Appeals process after receiving specific notices, such as:
A Notice of Deficiency: This is often referred to as a "90-day letter," proposing additional tax.
An Audit Report: If you have gone through an examination and disagree with the auditor's findings.
Collection Due Process (CDP) Notices: These involve the IRS's intent to file a federal tax lien or issue a levy against your property or wages.
Penalty Assessments: If you believe a penalty was assessed incorrectly or should be removed due to reasonable cause.
The main draw of the Appeals process is that it is typically faster and far less formal than a trial, allowing for a more conversational approach to resolving the issue.
Why Choose Appeals? The Benefits of Negotiation
The Appeals process offers several strategic advantages over litigation:
Informality and Speed: Compared to the rigid procedures of a federal court, appeals are generally faster and significantly less expensive.
Evidence Submission: You have a direct opportunity to present additional documentation, explain your circumstances, and provide legal arguments that may have been overlooked during the initial audit or collection phase.
Hazards of Litigation: This is a critical concept. Appeals Officers are trained to evaluate the "hazards of litigation"—the chance that the IRS might actually lose if the case went before a judge. If the IRS’s position is weak, the Appeals Officer has the authority to settle for a lower amount to avoid the risk of a total loss in court.
Because of these factors, a vast majority of tax disputes handled by firms like ALTA Tax Relief are successfully resolved at this stage.

Taking It to the U.S. Tax Court
The United States Tax Court is a specialized federal court designed specifically for taxpayers to challenge IRS determinations before they are required to pay the disputed amount. This is a powerful tool because, in most other federal courts, you must pay the tax first and then sue for a refund.
When the IRS sends you a Notice of Deficiency, the clock starts ticking. You generally have exactly 90 days from the date on the notice to file a petition with the Tax Court. Unlike an Appeals meeting, this is a formal legal proceeding. A judge will review the evidence, hear testimony if necessary, and apply the tax code to make a final decision.
Common issues that end up in Tax Court include:
Disputed audit adjustments or disallowed tax credits.
Claims of unreported income.
Disputes over whether a taxpayer qualifies for certain deductions.
Challenges to specific penalties.
In Tax Court, the IRS is represented by professional trial attorneys from the Office of Chief Counsel. Having an experienced advocate from ALTA Tax Relief is essential to leveling the playing field against government lawyers.
Comparing the Two Paths: Administrative vs. Judicial
While both options exist to protect your rights, they function very differently.
IRS Appeals:
Nature: An administrative process held within the IRS.
Focus: Centered on negotiation, settlement, and compromise.
Environment: Less formal and typically moves through the system more quickly.
Tax Court:
Nature: A formal judicial proceeding in federal court.
Focus: A rigid legal determination made by a judge based on the letter of the law.
Environment: Requires strict adherence to court procedures, legal filings, and rules of evidence.
In many cases, we recommend attempting to resolve the dispute through Appeals first. However, if negotiations reach a stalemate or if the issue is a complex matter of law that requires a judge’s ruling, the Tax Court becomes the necessary next step to protect your financial interests.
The Importance of Timing and Deadlines
In the world of tax resolution, timing is everything. If you receive a Notice of Deficiency and miss the 90-day filing deadline for the Tax Court, you lose your right to challenge the tax before paying it. Once that window closes, the IRS can begin aggressive collection actions, including wage garnishments and bank levies.
Because these deadlines are strict and the IRS rarely grants extensions, it is vital to review your notices immediately and seek professional help. At ALTA Tax Relief, we ensure that our clients never miss these critical windows of opportunity.
Which Path is Right for You?
Determining the best strategy requires a deep dive into the specifics of your case. We consider several factors when advising our St. Louis clients:
The Type of Notice: Different letters from the IRS trigger different legal rights.
The Financial Impact: The total amount of tax, penalties, and interest at stake.
The Evidence: How strong is your documentation?.
Past Progress: Have you already tried talking to the IRS without success?.
Every taxpayer's situation is unique. Whether your case is best suited for a quiet negotiation in an Appeals office or a formal petition in Tax Court, ALTA Tax Relief has the expertise to guide you.
Why ALTA Tax Relief is the Right Choice for St. Louis
Disputing an IRS decision is not something you should do alone. The choices you make in the first few weeks after receiving a notice can affect your finances for years to come.
ALTA Tax Relief offers something most firms don't: direct access to a former IRS employee. We don't use high-pressure salespeople or impersonal call centers. When you call us, you get:
Expertise: We know how the IRS thinks because we used to work there.
Personalized Solutions: We tailor our strategy to your specific needs, whether that involves Appeals, Tax Court, or collection alternatives like an Offer in Compromise or Penalty Abatement.
Proven Results: We have a track record of stopping aggressive collections and helping our clients regain their peace of mind.
Don't let tax debt control your life any longer. If you’ve received a notice from the IRS or simply disagree with a tax bill you've been given, act now to protect your rights.
Call ALTA Tax Relief today at 314-202-4342 or visit our contact page to schedule your free, confidential 30-minute consultation. Your fresh financial future starts with a single phone call.




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